PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539064.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 686aa MW: 74669.3 Da PI: 6.9904

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_023539064.1 275 PCPEFRK-GACPKGDSCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MCSGSKNKVA FSNSAMESKF QKLRDGALFS ANSILLELSA SDDVDGFKRE VEERDLDVDE 60 PSCWYGRGIG SKKMGFEERT PLMIAAMYGS SKVVKYLIET GKVDINRACG SDMTTALHCA 120 SAGGSGSSLE TIKLLLDGSA DVDCVDANGR KPVDLIVSAC RMVCYSGRKA MEMLLRGDGM 180 AGVGDLSLFL EEDQQKISAS LSAKEGSDKK EYPVDISLPD INSGIYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCTRK VCFFAHRPDE LRPVYASTGS GMPSPRSLSS SAADMSTMSP 360 LALGSSSLSL PTASTPPMSP LASVSSPKNG NLWQNKINLT PPALQLPGSR LKATLSARDL 420 DLEMELLGLE KNVSQMQHQQ QLIDEISRLS APSYWSADIS RSAELKPSNL DDMFGSLDSS 480 LLSQLQGTSL KTPISAQVQS PTGLQMRQNM NQLRASYPAN LSSSPVKKPS SFGFDSSSAV 540 AAAVMNSRSA AFAKRSQSFI DRAAVTRHPG VTGAANSAST MSSHLSDWNS PDGKLDWGMH 600 GNDLNKLKKS ASFGIRNNSM GTPTFASPVE EPDVSWVNSL VKDVPSDRFG MFGAEKRAYN 660 LKRDINEMIP SWMEQQLYAE QEQTVA

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MCSGSKNKVA FSNSAMESKF QKLRDGALFS ANSILLELSA SDDVDGFKRE VEERDLDVDE  60
PSCWYGRGIG SKKMGFEERT PLMIAAMYGS SKVVKYLIET GKVDINRACG SDMTTALHCA  120
SAGGSGSSLE TIKLLLDGSA DVDCVDANGR KPVDLIVSAC RMVCYSGRKA MEMLLRGDGM  180
AGVGDLSLFL EEDQQKISAS LSAKEGSDKK EYPVDISLPD INSGIYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCTRK VCFFAHRPDE LRPVYASTGS GMPSPRSLSS SAADMSTMSP  360
LALGSSSLSL PTASTPPMSP LASVSSPKNG NLWQNKINLT PPALQLPGSR LKATLSARDL  420
DLEMELLGLE KNVSQMQHQQ QLIDEISRLS APSYWSADIS RSAELKPSNL DDMFGSLDSS  480
LLSQLQGTSL KTPISAQVQS PTGLQMRQNM NQLRASYPAN LSSSPVKKPS SFGFDSSSAV  540
AAAVMNSRSA AFAKRSQSFI DRAAVTRHPG VTGAANSAST MSSHLSDWNS PDGKLDWGMH  600
GNDLNKLKKS ASFGIRNNSM GTPTFASPVE EPDVSWVNSL VKDVPSDRFG MFGAEKRAYN  660
LKRDINEMIP SWMEQQLYAE QEQTVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-178	C3H family protein