PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538959.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 228aa MW: 25763.5 Da PI: 8.4911

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	154	212	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ XP_023538959.1 154 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 212 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MEGSQRSELP NYQLQVSFLS NAPNPQPIHE MGFLHFEDHN QVLSFVAPNN NAATPTTAPP 60 TTTTTTTTTT AMPSAFTTPP HAHLLTRPSW SNDQVGTLDP KPGGDENCTG STSDGTNSCA 120 RWRNSNADKT KVKVRRKLRE PRFCFQTRSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC 180 THSNCRVKKR VERLSEDCRM VITTYEGRHN HSPCDDSNSS DHEPFTSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	KVRRKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	9e-65	WRKY family protein