PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538796.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 377aa MW: 42952.1 Da PI: 5.4746

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28	4.5e-09	15	56	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC++C ++ H+ H+ XP_023538796.1 15 ARACDSCVRKRARWYCAADDAFLCQSCDSAVHSAnplarrHQ 56 578*****************************6567777776 PP
2	CCT	68.5	1.8e-23	323	365	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ XP_023538796.1 323 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 365 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MLTKNIANAV GGKTARACDS CVRKRARWYC AADDAFLCQS CDSAVHSANP LARRHQRLRL 60 NTASSKPPSP SWVSGFTRKP RTPRPRRKSD DVVSLLSNPS FSLVPEADEG TWVEENEEDH 120 LLYRVPTFEP FVDEIQSSKS MGDEAGNFHG FLPSDLDLEE FAADVESLLG RNLESECFDM 180 EGLGIGLSIE KYDTSTRRVK VEEDGEEANR GNCRFENELE AEVDLMREPF ELNLEEYEQE 240 LKMVGVKNER EEEDCEVEED KLKKKRKVGL QLDCDAVIAA WGNDKSPWTT GERPDFEPDN 300 SWPHCVAICG VRCGEYGGRD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG 360 RFVKRTGFPQ SALPITN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MLTKNIANAV GGKTARACDS CVRKRARWYC AADDAFLCQS CDSAVHSANP LARRHQRLRL  60
NTASSKPPSP SWVSGFTRKP RTPRPRRKSD DVVSLLSNPS FSLVPEADEG TWVEENEEDH  120
LLYRVPTFEP FVDEIQSSKS MGDEAGNFHG FLPSDLDLEE FAADVESLLG RNLESECFDM  180
EGLGIGLSIE KYDTSTRRVK VEEDGEEANR GNCRFENELE AEVDLMREPF ELNLEEYEQE  240
LKMVGVKNER EEEDCEVEED KLKKKRKVGL QLDCDAVIAA WGNDKSPWTT GERPDFEPDN  300
SWPHCVAICG VRCGEYGGRD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG  360
RFVKRTGFPQ SALPITN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	88	RPRRK
2	260	266	DKLKKKR
3	263	268	KKKRKV
4	334	350	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-83	CO-like family protein