PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538673.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 380aa MW: 42984 Da PI: 5.6386

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C +sFs+ L H+r+H XP_023538673.1 4 HKCRLCFRSFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.5	0.00021	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_023538673.1 251 YKCETCNKVFRSYQALGGHRASH 273 9***********99999998887 PP
3	zf-C2H2	11.3	0.001	305	327	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_023538673.1 305 HECPVCFRVFSSGQALGGHKRSH 327 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MDRHKCRLCF RSFSNGRALG GHMRSHMVNL PLPPKPEDPP SPPPLLLPPP SHLHLSEDAA 60 DSASFLSSPS SSEGDAEEKG LSYGLRENPK RSIRIGDPEF SFAIDAGSVV LQDRESETES 120 SKNPTRRRSK RTRKPDHNHH HHHHHHHYNG FKRLNQPESW TETEPVSSIS GSTTEEDVAF 180 WLMMLSRDKW TKHQSGYGRR REVEEEDDDG DDDGDDDDDE EEEEEEMEES MEETDDSEAV 240 KLTRNRNRGN YKCETCNKVF RSYQALGGHR ASHKKIKVSV TYENPQLTTE QENAGTTTMA 300 ERKIHECPVC FRVFSSGQAL GGHKRSHVTG FSSANSRIPA KKFSDSLIDL NLPAPFEEDD 360 LSQIEHSAVS DADFVNAIRQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MDRHKCRLCF RSFSNGRALG GHMRSHMVNL PLPPKPEDPP SPPPLLLPPP SHLHLSEDAA  60
DSASFLSSPS SSEGDAEEKG LSYGLRENPK RSIRIGDPEF SFAIDAGSVV LQDRESETES  120
SKNPTRRRSK RTRKPDHNHH HHHHHHHYNG FKRLNQPESW TETEPVSSIS GSTTEEDVAF  180
WLMMLSRDKW TKHQSGYGRR REVEEEDDDG DDDGDDDDDE EEEEEEMEES MEETDDSEAV  240
KLTRNRNRGN YKCETCNKVF RSYQALGGHR ASHKKIKVSV TYENPQLTTE QENAGTTTMA  300
ERKIHECPVC FRVFSSGQAL GGHKRSHVTG FSSANSRIPA KKFSDSLIDL NLPAPFEEDD  360
LSQIEHSAVS DADFVNAIRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-46	C2H2 family protein