PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538546.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 357aa    MW: 38709.9 Da    PI: 4.5451
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_023538546.1 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                     *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MAAANPQPLQ ARPFQEHVQV PTMMGDDDGE YEDGGGGGGG GGGGGDVMDD VEEAHMTSVS  60
VANLGGLVMA SRTSELTLSF EGEVYVFPAV TPEKVQAVLL LLGGRDVPTS VPTMEVPYDH  120
MNRGMVDTPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT VRKEVAQRMH RKNGQFASLK  180
ESSGASSWES AHSCLQDGTR SETVLRKCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRNVSVDHT EPETPMDVKP TIMEGEFSGI PDEHGTPEDP GKTMTEGSSN  300
PSVNLDEEED INETTGGQTN SLPMQIVNDS TNDDEQEPLI ELANPSDTDI DIPTNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132DTPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-67GATA family protein