PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538335.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 446aa MW: 46590.5 Da PI: 8.9632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023538335.1 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	15.9	3.6e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_023538335.1 138 WKCERCSKKYAVQSDWKAHMKTC 160 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MVSAENNSPT AAHTASSSQG VELEIIDAVA PLKKKRNLPG MPDPTAEVIA LSPKSLLATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSNEIRK RVYVCPEASC VHHNPARALG 120 DLTGIKKHYS RKHCEKKWKC ERCSKKYAVQ SDWKAHMKTC GTREYRCDCG TLFSRRDSFI 180 THRAFCDALV FASTNSNAMV PAAAAVGSSP PAPPLTPSTT VLSPALSIQS SEPPDNPIGP 240 PPLTPPVTGL TSPTASNITN PTNGCGISGG TSVFAGVFAS PPISAQNPPH QITTSGNRSD 300 GVNNPQTTAI EPTSLSLSMS LFLSCTASAS GSSLFQEHPP HYSSSPQPAA MSATALLQKA 360 AQMGVTASNA ASFLRGSGLS ISPSPSQATF PSMTAGLELG FGNEPATRDL LGLGMGGATP 420 GSGFSGLFTS FGEAAAPYGG GGSNGS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MVSAENNSPT AAHTASSSQG VELEIIDAVA PLKKKRNLPG MPDPTAEVIA LSPKSLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSNEIRK RVYVCPEASC VHHNPARALG  120
DLTGIKKHYS RKHCEKKWKC ERCSKKYAVQ SDWKAHMKTC GTREYRCDCG TLFSRRDSFI  180
THRAFCDALV FASTNSNAMV PAAAAVGSSP PAPPLTPSTT VLSPALSIQS SEPPDNPIGP  240
PPLTPPVTGL TSPTASNITN PTNGCGISGG TSVFAGVFAS PPISAQNPPH QITTSGNRSD  300
GVNNPQTTAI EPTSLSLSMS LFLSCTASAS GSSLFQEHPP HYSSSPQPAA MSATALLQKA  360
AQMGVTASNA ASFLRGSGLS ISPSPSQATF PSMTAGLELG FGNEPATRDL LGLGMGGATP  420
GSGFSGLFTS FGEAAAPYGG GGSNGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	C2H2 family protein