PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538179.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family CO-like
Protein Properties Length: 333aa    MW: 36735.2 Da    PI: 6.6992
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ ++   ++lfC+ ++ +lC  C ++ H  
  XP_023538179.1  4 KLCDSCKVAAATLFCRADSAFLCLGCDSKVHAA 36
                    57*****999******************99954 PP
2zf-B_box24.94.2e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_023538179.1 46 VWLCEVCEQAPAHVTCKADAAALCITCDHDIHSAnplarrHERVPV 91
                    679*****************************66899999*99986 PP
3CCT70.44.4e-24272315144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_023538179.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 315
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MASKLCDSCK VAAATLFCRA DSAFLCLGCD SKVHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADAAALCI TCDHDIHSAN PLARRHERVP VTPFYDSSNS DNSLAVKPAA AINFLDDRYF  120
SNVNTDAAEE AEAASWLLPN PNPKPIENTD LNSGKLEFLE MDPYLDLDYD RVDPKLEVRE  180
HNSSAADGVV PVQSKGVDLS SVNDRSFGID FPCAKSFPYS YNPQSISHSV SSSSIEVGVV  240
PEGNTITEIS NPYTKPSTES TVPPLQISPA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AETRPRIKGR FAKRTDIELE ADRVSGYGVV PSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-131CO-like family protein