PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023538153.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family YABBY
Protein Properties Length: 189aa    MW: 21241 Da    PI: 8.6449
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023538153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY195.52.4e-6061614167
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                     +s+ eq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhC++l svn+a a q l+ ++  +    ++   +  + + +l s  + +++ +t  + 
  XP_023538153.1   6 NSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNS-QA-SSHSHNGNAADYRVELGSSSKCNNKMKTRAPI 98 
                     6789**********************************************999999886.22.22223333444444444444444444444454 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                     ++ ++n+d+ v     ++rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWah+P+i 
  XP_023538153.1  99 QN-TTNDDQRV-----INRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQ 161
                     44.34444444.....58*************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC SNLLDIVTVR CGHCSNLWSV NMAAAFQSLS  60
WKNSQASSHS HNGNAADYRV ELGSSSKCNN KMKTRAPIQN TTNDDQRVIN RPPEKKQRVP  120
SAYNKFIKEE IQRIKANNPD ITHREAFSTA AKNWAHYPHI QCLMLEANNL KTQNDGSEKH  180
YMSVPGLHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.19e-78YABBY family protein