PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537999.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 366aa MW: 41397.2 Da PI: 7.4488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	2e-11	185	229	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++ErrRR+++N +f+ Lr+llP+ +K +K ++L + eY+ +L XP_023537999.1 185 HMIAERRRREKLNGSFQALRSLLPPG-----TKKDKLSVLATTREYLTKL 229 7899********************97.....7999999999999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MDTVFSLDEA HRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE EDANQPSSSL 60 GSFERRLFDE YKQLVFNVEN NLVPGHAFNN SISFLELHQS LLHIHSSSQI QSHFYAAAGI 120 KSVVFMGCSN GEIELGFSEV NMVEKMRATS PFTSMAVLKN PPPPTWSSSS TNFLRRRPGS 180 AQLLHMIAER RRREKLNGSF QALRSLLPPG TKKDKLSVLA TTREYLTKLR EQVSELSHKN 240 QKLLEAQSQG EETANSFVNE RFTVRVSHAP PSINGTEIID LEITVRGQGS LMPDIVIRVL 300 EFLKNVVNVG VILSFHGIEQ LAPSSLLSRL RFRFSLQDGE WDELGFLEAV RRIVSDLAPT 360 YNEKQP

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MDTVFSLDEA HRATFLRAIM QSFHPTYICL WSYLPHPSHC LLNLDALFRE EDANQPSSSL  60
GSFERRLFDE YKQLVFNVEN NLVPGHAFNN SISFLELHQS LLHIHSSSQI QSHFYAAAGI  120
KSVVFMGCSN GEIELGFSEV NMVEKMRATS PFTSMAVLKN PPPPTWSSSS TNFLRRRPGS  180
AQLLHMIAER RRREKLNGSF QALRSLLPPG TKKDKLSVLA TTREYLTKLR EQVSELSHKN  240
QKLLEAQSQG EETANSFVNE RFTVRVSHAP PSINGTEIID LEITVRGQGS LMPDIVIRVL  300
EFLKNVVNVG VILSFHGIEQ LAPSSLLSRL RFRFSLQDGE WDELGFLEAV RRIVSDLAPT  360
YNEKQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	193	RRRPGSAQLLHMIAERRRR
2	189	194	ERRRRE
3	190	195	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-41	bHLH family protein