PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023537096.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 276aa MW: 29784.9 Da PI: 8.035

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023537096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	104.5	1.8e-32	83	143	3	63
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasska 63 +g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerq s++ XP_023537096.1 83 AGGINCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQFCGGDNSKRL 143 6899**********************************************86654443332 PP
2	DUF702	52.9	1.4e-16	165	199	119	153
DUF702 119 rvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 vs++dd++ee+aYqtav+igGhvfkGiLydqG e XP_023537096.1 165 SVSAMDDEDEEFAYQTAVNIGGHVFKGILYDQGSE 199 589******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MAELFYVGGR EEGPPNKEQQ HKQTQPTLFM YRNDQQIHHK GFEIWPPHYQ THFSSAVGQS 60 RRTDSDHPSR SAFTATRPAA ATAGGINCQD CGNQAKKDCA YLRCRTCCKS RGFHCQTHVK 120 STWVPAAKRR ERQFCGGDNS KRLRETQSAT ATATATPRLP ASFTSVSAMD DEDEEFAYQT 180 AVNIGGHVFK GILYDQGSEV HYTAGESSSG HGGDGSVHPL NLIAGPSNLA AASTTTSAAT 240 SSNPTAAVAP LLDPSIYPAP LNAFMAGTQF FPPSRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-57	SRS family protein