PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536990.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 609aa MW: 65027.8 Da PI: 9.3679

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	217	261	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_023536990.1 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 261 79****************************************985 PP
2	QLQ	57.2	5.2e-20	148	183	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k XP_023536990.1 148 PFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRK 183 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGSG GVAEMEDLRA 60 SKLPKTSASS LLRSNSSFFV SDSNQNHHQM LCFSSPKAEP PPLDKTASLS AASANFVRSS 120 APRNAGGSYG GLNGGSMHGG GFIGVRAPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP 180 IRKALESAGI PTFSGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD 240 QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITTAAT TTTTTTTTAS KLISSSPPSM 300 TAVPSNASPN TISCAGTHHF KNLNRGGSHP PPSATAPQIN RMFITNKENG GVGLHDSSSM 360 NMKQFKQLPF AIQKQNPFEE SPRTEFTSGS SNFLLNPSQK ASSLMTYRAF NPSEGLTTSQ 420 QAAETQHSLN WPKNQSDSSS VSWSNWNPDL QSDRTQLSIS IPMATSDFRS STSSPVHEKL 480 TLSPLRSSRE FDPIQMGLGV GNVMDEANNR QANWIPISWE SSMGGPLGEV LHSTNNNSGE 540 SKNSSILNLM TEGWDNSSSL GSSPTGVLQK TAFGSFSNSS TGSSPRTDNN KKTHEGGVGG 600 GSQCSDRLG

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGSG GVAEMEDLRA  60
SKLPKTSASS LLRSNSSFFV SDSNQNHHQM LCFSSPKAEP PPLDKTASLS AASANFVRSS  120
APRNAGGSYG GLNGGSMHGG GFIGVRAPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP  180
IRKALESAGI PTFSGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITTAAT TTTTTTTTAS KLISSSPPSM  300
TAVPSNASPN TISCAGTHHF KNLNRGGSHP PPSATAPQIN RMFITNKENG GVGLHDSSSM  360
NMKQFKQLPF AIQKQNPFEE SPRTEFTSGS SNFLLNPSQK ASSLMTYRAF NPSEGLTTSQ  420
QAAETQHSLN WPKNQSDSSS VSWSNWNPDL QSDRTQLSIS IPMATSDFRS STSSPVHEKL  480
TLSPLRSSRE FDPIQMGLGV GNVMDEANNR QANWIPISWE SSMGGPLGEV LHSTNNNSGE  540
SKNSSILNLM TEGWDNSSSL GSSPTGVLQK TAFGSFSNSS TGSSPRTDNN KKTHEGGVGG  600
GSQCSDRLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	9e-81	GRF family protein