PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536864.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 328aa MW: 36531 Da PI: 7.8221

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	77	101	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f G C+ G++C+FaHg XP_023536864.1 77 FKTRMCAKFKL-GLCRNGANCNFAHG 101 69*******.***********8 PP
2	zf-CCCH	31	4.5e-10	136	160	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lCr f+ + +C+yGdrC+F H XP_023536864.1 136 QKMKLCRKFYNGEECPYGDRCNFLH 160 5999*****66********** PP
3	zf-CCCH	41.2	2.8e-13	219	245	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++Gd+C+FaHg+ XP_023536864.1 219 WKTKLCTKWEVTGHCPFGDKCHFAHGR 245 8************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MSFNDIRGSV IPPPLHPYGA NGDATGCWSQ YPRNDLFDTQ SQFEPQLPPF KRARNSEENQ 60 SRVQNGPMNK GINNIFFKTR MCAKFKLGLC RNGANCNFAH GAEDMRQPPP NWQEIVGIRE 120 DDQSVSNWND DQKIIQKMKL CRKFYNGEEC PYGDRCNFLH EDPAKFRDDS GRFRESSAIS 180 IGTTVTPLTN GNDSSYSEPS RAVSCSASDS LRGNGNAFWK TKLCTKWEVT GHCPFGDKCH 240 FAHGRSELQL SLGREGEVSN PALNINPLVV AMEASPNLAA SVATSPLPEG QAKPCLLKWK 300 GPKKINRIYA DWLEDLPLSP TSANKLEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-93	C3H family protein