PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536809.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 301aa MW: 34061.6 Da PI: 6.3669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.1e-13	114	165	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ XP_023536809.1 114 QRMTHIAVERNRRKQMNEYLAVLRSLMPCS---YVQRGDQASIIGGAINFVKELE 165 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MMALETVVYP QNRDTFTYVC RDFCSYGGAW PGYDYGFQLE QEKSFLENPQ KLPTNWEPSP 60 EECSINQPLS VGALYPPMEV EQSPPSPPSP PPTTGRRKRR RTRNMKNKEE IENQRMTHIA 120 VERNRRKQMN EYLAVLRSLM PCSYVQRGDQ ASIIGGAINF VKELEQQLQF IKAHKEPAAS 180 SPFADFFSFP QFSTPATNST HDSASSNTQW AAGDIEVTMV DTHANLKILS KKRPRQLLKM 240 VAGFQSLRFS VLHLNVTTLD QMVLYSVSIK IEEGCELNTV DEIAAAVNQI LLSIQEESAF 300 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	101	RKRRR
2	97	102	RKRRRT
3	115	126	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-80	bHLH family protein