PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023536442.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 384aa MW: 41750.1 Da PI: 10.1107

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023536442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	313	370	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe++Hnh XP_023536442.1 313 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYENDHNHA 370 99**********************998**************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MLLLNNNMAV ELMVGFGDAT TATNFTPKLE ENAAVSAVQE AASAGIQSVQ NFLRLMSHTP 60 NQHHSQHDSS TSTTPNAIAP YDAVADSVVS NFKKVISLLD RNRTGHARFR RAPVLHTPPP 120 PPPPKVKPLQ HQDPSSSSAP QVQVKKQESV SAFKVYCPTP SSVVRLPPLP HNNPHQPSHP 180 PNTFQAQQNT SSVVLKNGSV DRKDPTTTIN FVASPPISAA NSYISSLTGD TESLQPSMSS 240 GFQFTHMSQV SSAGKPPLST SSLKRKCNSM DDSAMKCASS SGRCHCSKKR KNRIKRVIRV 300 PAVSSKLADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSL RGCPARKHVE RALDDPTMLI 360 VTYENDHNHA HSTETPATLV LESS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MLLLNNNMAV ELMVGFGDAT TATNFTPKLE ENAAVSAVQE AASAGIQSVQ NFLRLMSHTP  60
NQHHSQHDSS TSTTPNAIAP YDAVADSVVS NFKKVISLLD RNRTGHARFR RAPVLHTPPP  120
PPPPKVKPLQ HQDPSSSSAP QVQVKKQESV SAFKVYCPTP SSVVRLPPLP HNNPHQPSHP  180
PNTFQAQQNT SSVVLKNGSV DRKDPTTTIN FVASPPISAA NSYISSLTGD TESLQPSMSS  240
GFQFTHMSQV SSAGKPPLST SSLKRKCNSM DDSAMKCASS SGRCHCSKKR KNRIKRVIRV  300
PAVSSKLADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSL RGCPARKHVE RALDDPTMLI  360
VTYENDHNHA HSTETPATLV LESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	4e-86	WRKY family protein