PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535945.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 689aa    MW: 76638.1 Da    PI: 6.5762
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28198251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_023535945.1 198 KPRVVWSVELHRKFVNAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 251
                     79*******************.********************************8 PP
2Myb_DNA-binding39.61.2e-12200250148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v+av+qlG +   +k+I   m+ +++t++++ s++qky+
   XP_023535945.1 200 RVVWSVELHRKFVNAVNQLGIDkaVPKKILDLMNvEKLTRENVASHLQKYR 250
                      678********************************99*************7 PP
3Response_reg77.25.8e-26201281109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ + +l+++l++ +y +v+++ ++  al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++a+g+++++ + +  G
  XP_023535945.1  20 VLAVDDDPTCLLILETLLRRCQY-HVTTTNQAIMALKLLRENKnkFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHG 112
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel++
  XP_023535945.1 113 ACDYLLKPVRIEELRN 128
                     **************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    
MTVEPRIDDP NDQFPIGMRV LAVDDDPTCL LILETLLRRC QYHVTTTNQA IMALKLLREN  60
KNKFDVVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP  120
VRIEELRNIW QHVIRRKKFD PKDRMNSGNQ DKVDSENGEE AADPNGKFNK KRKDQNYNDD  180
DDQDYNEQEN DDASTQKKPR VVWSVELHRK FVNAVNQLGI DKAVPKKILD LMNVEKLTRE  240
NVASHLQKYR LYLKRISCVA NQQANMVTAL SSGDPSYLRI GSLSGIGNFH SLTGPPQFPN  300
TAYRSIPTTG MLGRLNTPAC MGMHGLSSPG TVKLGNMNNS NNDQSTFQPI MLSGNRSGNI  360
FQGIPEPSEL DQLQHVKHGT HVDNLSSAFD ERTVFPASIG LPNANMSSGT LSNPLLGLAN  420
DPMISEVQHH EVNVGRKFGS QSSISVLSST SESSRPSLDN LRCTGENWPK AVHSSRVHLN  480
TIPSSNLSNI ATSYHSQLRD NTTSALHIGN CLSDISSITS ISTPSHDSRT DSQRQGATTS  540
NRYNQMISKV PIQDWNDHKQ DAYCHTTMAR SSSNSLIPVN GAAETLPKHL ENQNTFSGSK  600
DFNVTNQAIV LDHAMMEHDR FKKSTMETSL MLKQGYLYDH QQKMQPRFSS SNCGSLEDIA  660
CAMMKEEQDD GKLLEGDFGC DNYPIGTCM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135173RRKKFDPKDRMNSGNQDKVDSENGEEAADPNGKFNKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-134ARR-B family protein