PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535442.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 1005aa MW: 110434 Da PI: 5.4272

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia ++ Rt+ qc +rwqk+l XP_023535442.1 37 KGQWTPEEDEILRQAVDHFKGKNWKKIAGCFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	57.1	4.2e-18	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+t a +++ gR +kqc++rw+++l XP_023535442.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTFATHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.6	1.8e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023535442.1 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence
MEGDKTISTP SDKPEIRDQR IRALHGRTSG PTRRSTKGQW TPEEDEILRQ AVDHFKGKNW 60 KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTFATHLP 120 GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYVASGLLA QFQDPIPAGQ PNQLPVSSSK VLGSGNDSGL NGMDTEEISV 240 CSQDPSVADS FMSDSACATL HKRKEFHLVE DLELGKEQSI SPVSSSEPYY PPMEAITCPI 300 AEFGQEVGHS LSPSEKNASD CRTSSNRQHQ CDLNEFPNIS SLQLGIEASQ FKAIGTRMGE 360 SHGASSSAQT SSMIKGAAAS AQAECMFISD DECCRVLFSD AKSDRCDLTS NLKEGSSVSE 420 MCDYKVPVHS FSTPKVENNH ALASQIHNPP SGTDVQEKNS VHQSGMPIPS TVSVNNDMIL 480 LGGTGPNQLF VGALEHGYVT SQQNAFAYNG GTSKSSYFEV ADNPEMQEQP GGAEDLPKPM 540 CINPFATAAD VTGTCSRSDE RAKQNGEHQD SGALCYEPPR FTSLDVPFFS CDLIQSGSEM 600 QEYSPLGIRQ LMMTSLNSVT PFRLWDSPSR DTSPDAVLKS AAKTFTSTPS ILKKRHRDLM 660 SPLSERRIDK KLETNVTSSL TENFSRLDVV FNDVADKASI LSPSNLKRSI EDSAEDKENV 720 YCTFEVREEK TDDGNESRNA TLSENNFPKS SSQDYTKQET ADTEMICVQS AAEIVPPGIL 780 AERDANDLFL HTVDKKTLSS STGIKKHYSP SRLADDVSKV SSGNSHGLPC SSPPTICGSY 840 PDGPTHELPV TSSSFHEKMD SNRPQITVKG IASLPETGET PFKRSIESPS AWMSPWFFNS 900 FLPGPRIDTE ISIEDMGYFS SPKGRSFDAI GLMKQVSERT AAACANAHEV LGNETPETLL 960 KGTSMKHLHC DETLLAECRV LDFSECGSPG KAETECVKTT AATSR

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence

MEGDKTISTP SDKPEIRDQR IRALHGRTSG PTRRSTKGQW TPEEDEILRQ AVDHFKGKNW  60
KKIAGCFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTFATHLP  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYVASGLLA QFQDPIPAGQ PNQLPVSSSK VLGSGNDSGL NGMDTEEISV  240
CSQDPSVADS FMSDSACATL HKRKEFHLVE DLELGKEQSI SPVSSSEPYY PPMEAITCPI  300
AEFGQEVGHS LSPSEKNASD CRTSSNRQHQ CDLNEFPNIS SLQLGIEASQ FKAIGTRMGE  360
SHGASSSAQT SSMIKGAAAS AQAECMFISD DECCRVLFSD AKSDRCDLTS NLKEGSSVSE  420
MCDYKVPVHS FSTPKVENNH ALASQIHNPP SGTDVQEKNS VHQSGMPIPS TVSVNNDMIL  480
LGGTGPNQLF VGALEHGYVT SQQNAFAYNG GTSKSSYFEV ADNPEMQEQP GGAEDLPKPM  540
CINPFATAAD VTGTCSRSDE RAKQNGEHQD SGALCYEPPR FTSLDVPFFS CDLIQSGSEM  600
QEYSPLGIRQ LMMTSLNSVT PFRLWDSPSR DTSPDAVLKS AAKTFTSTPS ILKKRHRDLM  660
SPLSERRIDK KLETNVTSSL TENFSRLDVV FNDVADKASI LSPSNLKRSI EDSAEDKENV  720
YCTFEVREEK TDDGNESRNA TLSENNFPKS SSQDYTKQET ADTEMICVQS AAEIVPPGIL  780
AERDANDLFL HTVDKKTLSS STGIKKHYSP SRLADDVSKV SSGNSHGLPC SSPPTICGSY  840
PDGPTHELPV TSSSFHEKMD SNRPQITVKG IASLPETGET PFKRSIESPS AWMSPWFFNS  900
FLPGPRIDTE ISIEDMGYFS SPKGRSFDAI GLMKQVSERT AAACANAHEV LGNETPETLL  960
KGTSMKHLHC DETLLAECRV LDFSECGSPG KAETECVKTT AATSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-180	MYB family protein