PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023535382.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 352aa MW: 40249.1 Da PI: 4.509

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023535382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.4	1.2e-08	286	332	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++k q+ +Le+++++++ p+ +++ + + ++L+ +++ WF +R XP_023535382.1 286 RLKKVQVGTLERVYRRTKRPTNAMISSIVQVTNLPRKRIVKWFEDKR 332 57889**************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MQLMALSAPV KAPEALLGSP SISGRVSFFF RRQFPSNFSL LHRPPVRHTL SLTLARRRNQ 60 NSSVGPSSSS SKKKKRNSFP KKTRDEADEE EDALELLFSQ LEEDLKNDKL TLDDDDDDDD 120 GEEDELSEED LAKLERELGL ALGIDIDDEE EEEEEENEEE AEEEAEEDLV DTEEEEMPVK 180 LKNWQLRRLA MALKKGRRKT SIKSLAAELC LDRAVVLDLL REPPPRLLML SASLPDPPTR 240 SIPETRTLQA TREEEEEEEE PVEVVTAEEV KVPVHVMQQS WAAQKRLKKV QVGTLERVYR 300 RTKRPTNAMI SSIVQVTNLP RKRIVKWFED KRGEDGVPDQ RLPYDRSAPK SA

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MQLMALSAPV KAPEALLGSP SISGRVSFFF RRQFPSNFSL LHRPPVRHTL SLTLARRRNQ  60
NSSVGPSSSS SKKKKRNSFP KKTRDEADEE EDALELLFSQ LEEDLKNDKL TLDDDDDDDD  120
GEEDELSEED LAKLERELGL ALGIDIDDEE EEEEEENEEE AEEEAEEDLV DTEEEEMPVK  180
LKNWQLRRLA MALKKGRRKT SIKSLAAELC LDRAVVLDLL REPPPRLLML SASLPDPPTR  240
SIPETRTLQA TREEEEEEEE PVEVVTAEEV KVPVHVMQQS WAAQKRLKKV QVGTLERVYR  300
RTKRPTNAMI SSIVQVTNLP RKRIVKWFED KRGEDGVPDQ RLPYDRSAPK SA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	76	RRRNQNSSVGPSSSSSKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-53	HB-other family protein