PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023535076.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 577aa    MW: 64487.4 Da    PI: 5.1181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023535076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4232.4e-1292075761373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL++cA+a+++  +e  ++l++  +  +s  g+p+qRl ay++e+L ar  +s+ ++y+al+++e +   s++ l+++++++e++P+lkf++
  XP_023535076.1 207 LKELLIACAKALAEYRMEDFDKLVTAARGAVSIGGEPIQRLGAYMVEGLVARKEDSGANIYHALNCREPA---SDDLLSYMHMLYEICPYLKFGY 298
                     5799*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+HiiDf+isqG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +++rLa++ ++ g+++ef+  v     +
  XP_023535076.1 299 MAANGAIAEACRNEDRIHIIDFQISQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEVVESRLAEISRKYGIQVEFHG-VPVFAPN 392
                     *******************************************************999999**************************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+++pgEalaVn+ lqlh+++desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr++++ri
  XP_023535076.1 393 ITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFVETLDYYLAIFESIDVTLPRDNKKRI 487
                     9********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+++ivnv+aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  XP_023535076.1 488 NVEQHCLAKDIVNVIACEGREREERHELFGKWKSRLTMAGFRQFPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAMLLGWKNRNLISASAW 576
                     **********************************************************9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MDSHQLFGFG VNSAEFSYTS SYSSVPSLPN SLLGPVNFNL RNSPVSSSLF SSQFESDSFT  60
TTTVSDNQDQ RNSPDDLSGL SPSCNSSFET SSFNRIASSY LGTNAFVYEG CSTENISYAL  120
KQLESALMEP DNEEVVNKPD ESSRPQMMGQ RPYSWSQDRC GGSSYVVQSQ MSPVSRSQRS  180
EEVRLGKRQK SMDEPILQQD GLPSDNLKEL LIACAKALAE YRMEDFDKLV TAARGAVSIG  240
GEPIQRLGAY MVEGLVARKE DSGANIYHAL NCREPASDDL LSYMHMLYEI CPYLKFGYMA  300
ANGAIAEACR NEDRIHIIDF QISQGTQWLT LLQALAARPS GAPHVRITGI DDPVSKYARG  360
DGLEVVESRL AEISRKYGIQ VEFHGVPVFA PNITRDMLDI RPGEALAVNF PLQLHHTPDE  420
SVDVNNPRDG LLRLVKSLSP KVVTLVEQES NTNTTPFFNR FVETLDYYLA IFESIDVTLP  480
RDNKKRINVE QHCLAKDIVN VIACEGRERE ERHELFGKWK SRLTMAGFRQ FPLSSYVNSV  540
IRSLLRCYSE HYTLVEKDGA MLLGWKNRNL ISASAWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-165GRAS family protein