PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534934.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 404aa MW: 44052.2 Da PI: 9.6447

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	164	186	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F+ +++L+ H+ + H XP_023534934.1 164 PCPHCGEVFPKPESLELHQLVrH 186 7******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MALLTSHHNK RRKKHKNPSP PPPSAQSSWD QIKSLLTCKQ IETSRVHEPV KRSPAYSKLG 60 SSCSSICSFR DVVHGNAKVV HRADNSPESS SVGQETRLLH RKPPNGSSSR SLTAPTPART 120 KHAASASYSS SSRGIQLRKL SGCYECHTIV DPTGYPIPRS SLCPCPHCGE VFPKPESLEL 180 HQLVRHAVSE LGPDDSGRNI VEIIFKSSWL KKDRPICKIQ RILKVHNTQR TIQRFEDCRD 240 AVKTRALNST KKNPRCAADG NELLRFHCSA LLCDLGSRGS TGLCGSIPGC GVCTVIRHGF 300 QCKPGGVPGV QTTASSGRAH DSFGCSDGRR RAMLVCRVIA GRVKRMAEDG AGTTTTEEEN 360 MSAAGSYDSV SRHSGMYSNL EELIIFNPKA ILPCFVVIYE ALQT

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MALLTSHHNK RRKKHKNPSP PPPSAQSSWD QIKSLLTCKQ IETSRVHEPV KRSPAYSKLG  60
SSCSSICSFR DVVHGNAKVV HRADNSPESS SVGQETRLLH RKPPNGSSSR SLTAPTPART  120
KHAASASYSS SSRGIQLRKL SGCYECHTIV DPTGYPIPRS SLCPCPHCGE VFPKPESLEL  180
HQLVRHAVSE LGPDDSGRNI VEIIFKSSWL KKDRPICKIQ RILKVHNTQR TIQRFEDCRD  240
AVKTRALNST KKNPRCAADG NELLRFHCSA LLCDLGSRGS TGLCGSIPGC GVCTVIRHGF  300
QCKPGGVPGV QTTASSGRAH DSFGCSDGRR RAMLVCRVIA GRVKRMAEDG AGTTTTEEEN  360
MSAAGSYDSV SRHSGMYSNL EELIIFNPKA ILPCFVVIYE ALQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-154	C2H2 family protein