PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534931.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 517aa MW: 56218.9 Da PI: 6.509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.9	1.3e-16	322	368	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_023534931.1 322 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 368 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MNYCFPDWNF EGDLPSASHK KSMGHEHDDL VELLWRNGQV VLQSQKARKP SLIQKQNQPL 60 DRTNISCGIS STLIQDDETV SWIHDPLDDD SFDKEFCSEF FSELPQTRFG AFDAAAATAT 120 QNSKPPAVLA ELPTNTMPPP RYQCSDSIRQ TKDLGDLGKM MNFSQVPVAL RGDLGSSNGG 180 REAGNLIHGE GKDCSATTVG SSHCGSNQVP NPEPNVSRVS TSGVGNAGLS VDLSNKKMAA 240 QGERGKTETM DPTATSSSGG SGSSMDRSRT IGQSNGGNSN KRKGRDGEES ECQSETAELE 300 SAEGNKAAPR SGFPRRTRAA EVHNLSERRR RERINEKMKA LQELIPHCNK TDKASMLDEA 360 IEYLKSLQLQ LQVMWMGNGM APMMFPGVQH YMSRMAMGMG MAQPSMPSIH NSMQLPRVPV 420 VDQSVSATPT PNQPTICQPQ LFNPVNYQNQ MSNPALQEQY ARLMSFHHMQ PSSQPINVFR 480 FCPSTVLQSQ TPAATGPPSG PTFGGPIAND IVNGTLG

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MNYCFPDWNF EGDLPSASHK KSMGHEHDDL VELLWRNGQV VLQSQKARKP SLIQKQNQPL  60
DRTNISCGIS STLIQDDETV SWIHDPLDDD SFDKEFCSEF FSELPQTRFG AFDAAAATAT  120
QNSKPPAVLA ELPTNTMPPP RYQCSDSIRQ TKDLGDLGKM MNFSQVPVAL RGDLGSSNGG  180
REAGNLIHGE GKDCSATTVG SSHCGSNQVP NPEPNVSRVS TSGVGNAGLS VDLSNKKMAA  240
QGERGKTETM DPTATSSSGG SGSSMDRSRT IGQSNGGNSN KRKGRDGEES ECQSETAELE  300
SAEGNKAAPR SGFPRRTRAA EVHNLSERRR RERINEKMKA LQELIPHCNK TDKASMLDEA  360
IEYLKSLQLQ LQVMWMGNGM APMMFPGVQH YMSRMAMGMG MAQPSMPSIH NSMQLPRVPV  420
VDQSVSATPT PNQPTICQPQ LFNPVNYQNQ MSNPALQEQY ARLMSFHHMQ PSSQPINVFR  480
FCPSTVLQSQ TPAATGPPSG PTFGGPIAND IVNGTLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	332	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-66	bHLH family protein