PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023534898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 610aa MW: 66623 Da PI: 4.5247 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.9 | 5.9e-109 | 238 | 610 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++Ll+cA+ +s + +a ++L r+ + ++gdp++R+a+yf eAL++rl+ + + s +++ ns++ l ++k++++++P+ kf+hl XP_023534898.1 238 LKVLLDCARLCDS-EPDRAVKTLDRIGKSLLEQGDPIERVAFYFGEALRNRLSP---AARNNFLDSIETDANSEDFLLSYKALNDACPYSKFAHL 328 679******8877.7889999********************************9...33333434444457799********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 taNqaIlea+++++++Hi+Df+i qG+QW+aLlqaL++R+ g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ + + +e+ XP_023534898.1 329 TANQAILEATQRASKIHIVDFGIVQGVQWAALLQALTTRATGKPiKVRISGIPAPSLGesPAASLYATGNRLSEFAKLLELNFEFEP-ILTPIEN 422 ****************************************88887**********99998999************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 l+ ++++++++E+laVn++lql+ llde ++ L+l kslsPk+v++ e ea++n++ F +rf +al+yysa+f+sle +lpr+s er XP_023534898.1 423 LNKSSFSIQSDEVLAVNFMLQLYGLLDEVPVGV---HNALRLAKSLSPKIVTLGEYEASLNRTGFYNRFKNALKYYSAIFESLEPNLPRDSPERL 514 **************************6644444...48********************************************************* PP GRAS 284 kvErellgreivnvvace...gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373 +E+ l+gr+i v+ +e g++rr r+e +e+W++ +e++GF+pv+ls++a +qak ll +++ + y++ e+ +++ l W+d pL++vS+W XP_023534898.1 515 QLEKLLIGRRIAGVIGTEeesGSKRRVRMEDKEEWKNLMESSGFEPVALSHYAISQAKILLWNYNyNSLYSLIESAPEFLsLAWNDVPLLTVSSW 609 ***************988223456*****************************************9999***999999999************** PP GRAS 374 r 374 r XP_023534898.1 610 R 610 8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QQQQQLCPLT PFSLLPWTTT NSSPTMASSS 60 SSSPNLSFGV SGSAFADPFQ VAGDADSAEP AFHFPNLEHP SAGFRFFPNF GGGEFDSDDW 120 MDSLVGGGDS TDSSTLPSGC DAYAEYGLFG VDLFNGSPSR LVVACSPPSD FNRAVLPESS 180 CNTSTVPPPP WSSPPPSVKD AGVANPPAEK LQTNDVVEAS SSAPEEVLPL PSPPPPLLKV 240 LLDCARLCDS EPDRAVKTLD RIGKSLLEQG DPIERVAFYF GEALRNRLSP AARNNFLDSI 300 ETDANSEDFL LSYKALNDAC PYSKFAHLTA NQAILEATQR ASKIHIVDFG IVQGVQWAAL 360 LQALTTRATG KPIKVRISGI PAPSLGESPA ASLYATGNRL SEFAKLLELN FEFEPILTPI 420 ENLNKSSFSI QSDEVLAVNF MLQLYGLLDE VPVGVHNALR LAKSLSPKIV TLGEYEASLN 480 RTGFYNRFKN ALKYYSAIFE SLEPNLPRDS PERLQLEKLL IGRRIAGVIG TEEESGSKRR 540 VRMEDKEEWK NLMESSGFEP VALSHYAISQ AKILLWNYNY NSLYSLIESA PEFLSLAWND 600 VPLLTVSSWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |