PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023534533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 83542.8 Da PI: 6.0838 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 94 | 150 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ XP_023534533.1 94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 150 688999************************************************995 PP | |||||||
2 | START | 222.2 | 1.6e-69 | 284 | 504 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el ++a+++ep+W++s +n+de+l++f+++ + ++ ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+tl XP_023534533.1 284 ELAVAAMEELTRMAQLGEPLWMTSLdgstNVLNEDEYLRTFPRGIGpkpsgFKCEASRESAVVIMNHINLVEILMDVN-QWSTLFSgivsRAMTL 377 57899********************9999999***********999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m++e+q++splvp R++++vRy++q+ +g+w++vdvS+d ++ p + R++++pSg+li++++ng+skvtwvehv XP_023534533.1 378 EVLSTGvagnynGALQVMTSEFQVPSPLVPtRESYYVRYCKQHVDGTWAVVDVSLDDLRPTP----GLRCRRRPSGCLIQEMPNGYSKVTWVEHV 468 ************************************************************99....6**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+l+++lv+sg+a+gak+wv tl+rqce+ XP_023534533.1 469 EVDDRGVHSLYKQLVSSGQAFGAKRWVTTLDRQCER 504 **********************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 756 aa Download sequence |
MGITLLDFTH LMNLFFLRFK THKLSWKNLK DLSKMFQPSI FDDGKLLPLD MPQNTSDSDF 60 ARIRDDDFDS ATKSGSDNNH ELASGDDQDP RPKKKRYHRH TQHQIQEMEA FFKECPHPDD 120 KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENTQL RTENEKLRAD NMRYREALSN 180 ASCPNCGGPT AIGEMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVN YPLLSPPVPS 240 RPLELGMGNF GPQSGLGGDI YGSAGDLIRS ISAPTEADKP MIIELAVAAM EELTRMAQLG 300 EPLWMTSLDG STNVLNEDEY LRTFPRGIGP KPSGFKCEAS RESAVVIMNH INLVEILMDV 360 NQWSTLFSGI VSRAMTLEVL STGVAGNYNG ALQVMTSEFQ VPSPLVPTRE SYYVRYCKQH 420 VDGTWAVVDV SLDDLRPTPG LRCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDRGVHSLYK 480 QLVSSGQAFG AKRWVTTLDR QCERLASAMA TNIPTGDVGV ITNQEGRKSM LKLAERMVIS 540 FCAGVSASTT HTWTTLSGTG ADDVRVMTRK SIDDPGRPPG IVLSAATSFW LPVPPKRIFD 600 FLRDENSRSE WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN MLILQESCTD 660 PTASFVIYAP VDIVAMNVVL NGGDPDYVAL LPSGFAILPD GTAETATGGS LLTVAFQILV 720 DSVPTAKLSL GSVATVNNLI ACTAERIKAS LSCETA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | HD-ZIP family protein |