PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534512.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 430aa MW: 47712.6 Da PI: 6.4307

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.6	2.6e-17	143	192	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023534512.1 143 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 192 78*****************......55**********************998 PP
2	AP2	41	4.9e-13	235	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_023534512.1 235 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 285 79******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MWDLNDSPDH GGTDEFEGLS SIDGDDDRAK WVGSINSNSS SSAVVLEDGS DADEASVGER 60 EHPVSRESFS ATHPPATRQF FPLENSNVDA SSASGGGGGS TAFPRARWFG VKFCQTEPVS 120 AVRPMAVLQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHSAA 180 RAYDRAAIKF RGTDADINFS IEDYEEDLKQ MGKLTKEEFV HVLRRQSTCY PRGSSKFRGV 240 TLHKCGRWEA RMGQFLGKKY VYLGLFDSEI EAARAYDKAA IKCNGKEAVT NFDPTIYENE 300 LRTDASSGNV LEQNLDLRLG NSSSKQHTND MQNKESNVLE KMQFGSETTV RCPRSIDTTI 360 HGQSPYMNES NSEIDVSLSL SERQQWQQGC GGYEQIGTAA AASSGFPQIQ VSSSPNWVKK 420 NNGCFLERPF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MWDLNDSPDH GGTDEFEGLS SIDGDDDRAK WVGSINSNSS SSAVVLEDGS DADEASVGER  60
EHPVSRESFS ATHPPATRQF FPLENSNVDA SSASGGGGGS TAFPRARWFG VKFCQTEPVS  120
AVRPMAVLQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHSAA  180
RAYDRAAIKF RGTDADINFS IEDYEEDLKQ MGKLTKEEFV HVLRRQSTCY PRGSSKFRGV  240
TLHKCGRWEA RMGQFLGKKY VYLGLFDSEI EAARAYDKAA IKCNGKEAVT NFDPTIYENE  300
LRTDASSGNV LEQNLDLRLG NSSSKQHTND MQNKESNVLE KMQFGSETTV RCPRSIDTTI  360
HGQSPYMNES NSEIDVSLSL SERQQWQQGC GGYEQIGTAA AASSGFPQIQ VSSSPNWVKK  420
NNGCFLERPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-118	AP2 family protein