PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534394.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 686aa MW: 76657 Da PI: 6.5103

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.4	6.4e-24	129	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_023534394.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFL--RGD 219 99**************************9543..445568********************************************..347 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+v+v+r+ XP_023534394.1 220 NGQLRVGVRRR 230 8889***97 PP
2	Auxin_resp	96.2	4.8e-32	255	333	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a++ k+s+GmRf m+fe+eds+err+sGt++g d++p +W nS WrsL XP_023534394.1 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNYKFSLGMRFNMRFEGEDSPERRFSGTIIGAGDISP-HWANSSWRSL 333 689*************6..89******************************************99.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MTFHGGDSYT QSCVSAQGRG RDDLYMELWR ACAGPLVDIP RVDEKVFYFP QGHMEQLEAS 60 TNLELNKRIP LFNLSSKILC RVIYIEPRAD HESDEVYAQI TLLPEANQSE PRSLDPCPPE 120 PVKPVVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM TQATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLTAG DSFVFLRGDN GQLRVGVRRR AQQQSSMPPS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNYK FSLGMRFNMR 300 FEGEDSPERR FSGTIIGAGD ISPHWANSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS 360 AVSSLSQPVS KNKRPRQSTE TPAHDGADLT KSAHWDSGLA QSHDGKQCGN ATESRKGENN 420 ELCHHSEIDT ISNSTCVSRT PTDGTWLFST QSNGYKDPVN DTAQDYKTVP VCGWSILSGP 480 SKVSDDQILD PTENGWKGET VASCRLFGID LNHFAKLPAE KASSQPSSMS SDTDGRISTL 540 SLAQSDSKSD NIEASIERKL EPLQASLKET QSSSTNTRSR TKVHMHGMAV GRAVDLTILE 600 GYDQLIDELE KMFDVRGQLS ARGKWEIVYT DDEGDMMLVG DDPWEEFCNM VRRIFICSRE 660 QVKKMSSGSK QLASIEVEGA VLRMLE

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MTFHGGDSYT QSCVSAQGRG RDDLYMELWR ACAGPLVDIP RVDEKVFYFP QGHMEQLEAS  60
TNLELNKRIP LFNLSSKILC RVIYIEPRAD HESDEVYAQI TLLPEANQSE PRSLDPCPPE  120
PVKPVVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM TQATPTQDLV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLTAG DSFVFLRGDN GQLRVGVRRR AQQQSSMPPS  240
VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNYK FSLGMRFNMR  300
FEGEDSPERR FSGTIIGAGD ISPHWANSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS  360
AVSSLSQPVS KNKRPRQSTE TPAHDGADLT KSAHWDSGLA QSHDGKQCGN ATESRKGENN  420
ELCHHSEIDT ISNSTCVSRT PTDGTWLFST QSNGYKDPVN DTAQDYKTVP VCGWSILSGP  480
SKVSDDQILD PTENGWKGET VASCRLFGID LNHFAKLPAE KASSQPSSMS SDTDGRISTL  540
SLAQSDSKSD NIEASIERKL EPLQASLKET QSSSTNTRSR TKVHMHGMAV GRAVDLTILE  600
GYDQLIDELE KMFDVRGQLS ARGKWEIVYT DDEGDMMLVG DDPWEEFCNM VRRIFICSRE  660
QVKKMSSGSK QLASIEVEGA VLRMLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein