PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534389.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 716aa MW: 79086.4 Da PI: 8.8018

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	5.9e-24	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + ++ XP_023534389.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLR--SK 202 89**************************997556555..8********************************************4..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_023534389.1 203 NGDLCVGIRRA 213 8888**996 PP
2	Auxin_resp	116.4	2.5e-38	280	363	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_023534389.1 280 AAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 363 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MKEADKNLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQAAVDFTSS LRIPPLIPCR 60 VLAVKFLADH ETDEVYANVR LVPLANNEIN CEEEGGFGSN GSENNMEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNSIPPYGG 240 LTMFLRDEDN KLSRKGSLSS NGGGSLRGKG KVRPESVIEA AALAASGQAF EVVYYPRAST 300 PEFCVKASSV RAAMRIQWCS GMRFKMPFET EDSSRISWFM GTISSVQVAD PIRWPNSPWR 360 LLQVTWDEPD LLQNVKRVSP WLVELVSNMP VIQLSPFSPP RKKFRLPQHP DFPLDSQFQL 420 SSFPSNTLRP SSPMCCLSDN TSVGIQGARH TQFGISSSDF HLNNKLQLGL LPSSFQQLDF 480 HSRISHRSVT DHRGSGSQNS SALLNAENTG PKLERSDSVK KYQFLLFGQP ILTEQQITRS 540 SSGDVHSPRT EKSSLDVNLE RVKFLSDGSG YTFKQQQISP NKSPGAGFPW YQGYQATELG 600 LDIGHCKVFM ESEDVGRTLN LSVIGSYEEL YRRLANMFGM EKPDILSHVL YQDATGAVKQ 660 AGDKPFSDFI KTARRLTILT DSGSDKMVGR RLMDGLRSGE NGLDSSNKTG PLSIFA

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MKEADKNLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQAAVDFTSS LRIPPLIPCR  60
VLAVKFLADH ETDEVYANVR LVPLANNEIN CEEEGGFGSN GSENNMEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNSIPPYGG  240
LTMFLRDEDN KLSRKGSLSS NGGGSLRGKG KVRPESVIEA AALAASGQAF EVVYYPRAST  300
PEFCVKASSV RAAMRIQWCS GMRFKMPFET EDSSRISWFM GTISSVQVAD PIRWPNSPWR  360
LLQVTWDEPD LLQNVKRVSP WLVELVSNMP VIQLSPFSPP RKKFRLPQHP DFPLDSQFQL  420
SSFPSNTLRP SSPMCCLSDN TSVGIQGARH TQFGISSSDF HLNNKLQLGL LPSSFQQLDF  480
HSRISHRSVT DHRGSGSQNS SALLNAENTG PKLERSDSVK KYQFLLFGQP ILTEQQITRS  540
SSGDVHSPRT EKSSLDVNLE RVKFLSDGSG YTFKQQQISP NKSPGAGFPW YQGYQATELG  600
LDIGHCKVFM ESEDVGRTLN LSVIGSYEEL YRRLANMFGM EKPDILSHVL YQDATGAVKQ  660
AGDKPFSDFI KTARRLTILT DSGSDKMVGR RLMDGLRSGE NGLDSSNKTG PLSIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein