PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534376.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 778aa MW: 86330 Da PI: 6.741

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	169	270	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_023534376.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFL--RGE 259 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_023534376.1 260 NGELRLGIRRA 270 9999**996 PP
2	Auxin_resp	120.9	9.3e-40	295	376	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fv++++k++k+++++v+vG+Rfkm+fe++ds+err+ G+v g+ d+dp+rWpnSkWr+L XP_023534376.1 295 VVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCL 376 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MEIDLNLTAS DVGKNAYCNG NCEEGRCNYC LSSSTSSCSS NSSPALVSSS TYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND 120 EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST 180 HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL 240 FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAD DLARVVKAIS 300 TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI 360 GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIEPSVS LPPLSVQSSP RLKKLRTSLQ 420 AAPPNAFAGR GGFMDFEDSI RSSKVLQGQE NVGIVSPFYG RDTTKRSLEF EVRSSAHQAS 480 GGAEKYRGDY VKVHPNSSFT GFMESERFLK VLQGQEICSL RPQTRKPEHC LGVWGKFNLS 540 DNSFNTFHSP NSSFYHMASN GAQNMYFPRS EFYSTGQAAA VMRSNDGNFP RESALFSPSV 600 DASVMSTTSG SNIKNSKDEN VNENSTGCRL FGFSLTTETA TNMQSSGKRS CTKVHKQGSL 660 VGRAIDLSRL SGYTDLLSEL ERLFCMEGLL KDPDKGWRVL YTDNENDVMV VGDYPWLDFC 720 DAVSKIHIYT QEEVEKMTNG VISDDTQSCL DQAPLCMEAS KSSSVGQPDS SPTVVREF

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MEIDLNLTAS DVGKNAYCNG NCEEGRCNYC LSSSTSSCSS NSSPALVSSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL  240
FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSCAD DLARVVKAIS  300
TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI  360
GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIEPSVS LPPLSVQSSP RLKKLRTSLQ  420
AAPPNAFAGR GGFMDFEDSI RSSKVLQGQE NVGIVSPFYG RDTTKRSLEF EVRSSAHQAS  480
GGAEKYRGDY VKVHPNSSFT GFMESERFLK VLQGQEICSL RPQTRKPEHC LGVWGKFNLS  540
DNSFNTFHSP NSSFYHMASN GAQNMYFPRS EFYSTGQAAA VMRSNDGNFP RESALFSPSV  600
DASVMSTTSG SNIKNSKDEN VNENSTGCRL FGFSLTTETA TNMQSSGKRS CTKVHKQGSL  660
VGRAIDLSRL SGYTDLLSEL ERLFCMEGLL KDPDKGWRVL YTDNENDVMV VGDYPWLDFC  720
DAVSKIHIYT QEEVEKMTNG VISDDTQSCL DQAPLCMEAS KSSSVGQPDS SPTVVREF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein