PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534230.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 416aa MW: 45465.7 Da PI: 4.8747

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_023534230.1 4 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP
2	zf-B_box	20.3	1.2e-06	47	88	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_023534230.1 47 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsstsssHKRQ 88 7*****************************.557888888876 PP
3	CCT	58.7	2e-20	359	402	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ XP_023534230.1 359 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAG 402 99***************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC 60 IDERVSLCQN CDWTGHGTSS TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE 120 TEMGLMSISE TDLTGAWSPS ENNDACRRML ESTEARDVCS RDKSNVLVGS SSLSDFGSRP 180 HTSDQPVELA NMAVPKFCCP GTKLPEFCGD DDDDIYKEFD MDEMDLNLEN YEELFGMSLN 240 HSEDLFENGG IDSLFEAKGF EDSVCHSAVA AEGSSVGVVK PMQPACSNGA SADSVVSTKT 300 EPILCFNSRQ ASGVSFSGIT GESSAGDYQD CGASSMLLMG EPPPWCAPGT ESSIPSSDRN 360 NAVLRYKEKK KTRKFEKRVR YATRKARADV RRRVKGRFVK AGEAYDYDPL SQTRSC

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC  60
IDERVSLCQN CDWTGHGTSS TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE  120
TEMGLMSISE TDLTGAWSPS ENNDACRRML ESTEARDVCS RDKSNVLVGS SSLSDFGSRP  180
HTSDQPVELA NMAVPKFCCP GTKLPEFCGD DDDDIYKEFD MDEMDLNLEN YEELFGMSLN  240
HSEDLFENGG IDSLFEAKGF EDSVCHSAVA AEGSSVGVVK PMQPACSNGA SADSVVSTKT  300
EPILCFNSRQ ASGVSFSGIT GESSAGDYQD CGASSMLLMG EPPPWCAPGT ESSIPSSDRN  360
NAVLRYKEKK KTRKFEKRVR YATRKARADV RRRVKGRFVK AGEAYDYDPL SQTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-114	CO-like family protein