PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023534227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | CO-like | ||||||||
Protein Properties | Length: 416aa MW: 45465.7 Da PI: 4.8747 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.4e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_023534227.1 4 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 20.3 | 1.2e-06 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_023534227.1 47 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsstsssHKRQ 88 7*****************************.557888888876 PP | |||||||
3 | CCT | 58.7 | 2e-20 | 359 | 402 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ XP_023534227.1 359 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAG 402 99***************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence |
MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC 60 IDERVSLCQN CDWTGHGTSS TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE 120 TEMGLMSISE TDLTGAWSPS ENNDACRRML ESTEARDVCS RDKSNVLVGS SSLSDFGSRP 180 HTSDQPVELA NMAVPKFCCP GTKLPEFCGD DDDDIYKEFD MDEMDLNLEN YEELFGMSLN 240 HSEDLFENGG IDSLFEAKGF EDSVCHSAVA AEGSSVGVVK PMQPACSNGA SADSVVSTKT 300 EPILCFNSRQ ASGVSFSGIT GESSAGDYQD CGASSMLLMG EPPPWCAPGT ESSIPSSDRN 360 NAVLRYKEKK KTRKFEKRVR YATRKARADV RRRVKGRFVK AGEAYDYDPL SQTRSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-114 | CO-like family protein |