PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534226.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 462aa MW: 50778.8 Da PI: 5.1425

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.2e-07	50	91	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_023534226.1 50 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 91 7*****************************657888888876 PP
2	zf-B_box	20.1	1.3e-06	93	134	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_023534226.1 93 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsstsssHKRQ 134 7*****************************.557888888876 PP
3	CCT	58.5	2.3e-20	405	448	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk+ XP_023534226.1 405 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAG 448 99***************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM 60 VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT 120 GHGTSSTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACETEMG LMSISETDLT 180 GAWSPSENND ACRRMLESTE ARDVCSRDKS NVLVGSSSLS DFGSRPHTSD QPVELANMAV 240 PKFCCPGTKL PEFCGDDDDD IYKEFDMDEM DLNLENYEEL FGMSLNHSED LFENGGIDSL 300 FEAKGFEDSV CHSAVAAEGS SVGVVKPMQP ACSNGASADS VVSTKTEPIL CFNSRQASGV 360 SFSGITGESS AGDYQDCGAS SMLLMGEPPP WCAPGTESSI PSSDRNNAVL RYKEKKKTRK 420 FEKRVRYATR KARADVRRRV KGRFVKAGEA YDYDPLSQTR SC

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM  60
VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT  120
GHGTSSTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACETEMG LMSISETDLT  180
GAWSPSENND ACRRMLESTE ARDVCSRDKS NVLVGSSSLS DFGSRPHTSD QPVELANMAV  240
PKFCCPGTKL PEFCGDDDDD IYKEFDMDEM DLNLENYEEL FGMSLNHSED LFENGGIDSL  300
FEAKGFEDSV CHSAVAAEGS SVGVVKPMQP ACSNGASADS VVSTKTEPIL CFNSRQASGV  360
SFSGITGESS AGDYQDCGAS SMLLMGEPPP WCAPGTESSI PSSDRNNAVL RYKEKKKTRK  420
FEKRVRYATR KARADVRRRV KGRFVKAGEA YDYDPLSQTR SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-114	CO-like family protein