PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023534067.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 424aa MW: 46541.8 Da PI: 9.1779

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023534067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_023534067.1 63 FVCEICGKGFQRDQNLQLHRRGH 85 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MQQSLRMMEK MVNDEFTNSF LQIPLAGSNP FSAKKKRNHP GTPDPDAEVI ALSPKTLMAM 60 NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR KRVYVCPETS CVHHHPSRAL 120 GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDCKAHSKT CGTKEYKCGC GTLFSRRDSF 180 ITHRAFCDAL AEETARVNAA TTITAAMTAA GNFNCNFMAG ITEPPFMPSI FSCNGLSSRT 240 NNNNLHPLPQ INSGLMYCDP LLNSCHAPPP ADYNLNWVFG TKGNNSVQNP PLMSGGGGGG 300 VSSLYSHQLQ QVNQTHMANM SATALLQKAA EIGANSSSDP PFFQEGFVFK CSGGTVQNGS 360 EFSTSVTQIP IMANENEMYT AKRRRTQSEF MGSGSGFTGG GQTRDFLGVG ANTICHTSSI 420 NGWI

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MQQSLRMMEK MVNDEFTNSF LQIPLAGSNP FSAKKKRNHP GTPDPDAEVI ALSPKTLMAM  60
NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR KRVYVCPETS CVHHHPSRAL  120
GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDCKAHSKT CGTKEYKCGC GTLFSRRDSF  180
ITHRAFCDAL AEETARVNAA TTITAAMTAA GNFNCNFMAG ITEPPFMPSI FSCNGLSSRT  240
NNNNLHPLPQ INSGLMYCDP LLNSCHAPPP ADYNLNWVFG TKGNNSVQNP PLMSGGGGGG  300
VSSLYSHQLQ QVNQTHMANM SATALLQKAA EIGANSSSDP PFFQEGFVFK CSGGTVQNGS  360
EFSTSVTQIP IMANENEMYT AKRRRTQSEF MGSGSGFTGG GQTRDFLGVG ANTICHTSSI  420
NGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-133	C2H2 family protein