PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533945.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 340aa MW: 37650.5 Da PI: 7.4774

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533945.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023533945.1 88 FKTKLCCKFRA-GTCPYITNCNFAHS 112 69*******.***********8 PP
2	zf-CCCH	41.9	1.7e-13	221	246	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023533945.1 221 WKTRICNKWELTGYCPFGNKCHFAHG 246 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MDYNGGNVVH VIPGTSSENW PGEVWATEDE YRAWNNGVDG CVDTPSNSSY DQRQSQSRSG 60 SEPPNKKSRS SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP 120 PNWQEIVAAH EEEKAVFLEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD 180 GCTFLHDEQS KNRESVAISL GPGGYSGGGS GNGSNTKPSN WKTRICNKWE LTGYCPFGNK 240 CHFAHGAAEL HRYGGGLMET ETRDSSSAPP DQKQGVLPKA PGDTVVASVP SVPHSDVYHV 300 VIPSQRSTIV IQRSGQRTHQ KWKGPDKISR IYGDWIDDNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-129	C3H family protein