PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533944.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 341aa MW: 37778.6 Da PI: 7.4774

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_023533944.1 88 FKTKLCCKFRA-GTCPYITNCNFAHS 112 69*******.***********8 PP
2	zf-CCCH	41.9	1.7e-13	222	247	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023533944.1 222 WKTRICNKWELTGYCPFGNKCHFAHG 247 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDYNGGNVVH VIPGTSSENW PGEVWATEDE YRAWNNGVDG CVDTPSNSSY DQRQSQSRSG 60 SEPPNKKSRS SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP 120 PNWQQEIVAA HEEEKAVFLE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG 180 DGCTFLHDEQ SKNRESVAIS LGPGGYSGGG SGNGSNTKPS NWKTRICNKW ELTGYCPFGN 240 KCHFAHGAAE LHRYGGGLME TETRDSSSAP PDQKQGVLPK APGDTVVASV PSVPHSDVYH 300 VVIPSQRSTI VIQRSGQRTH QKWKGPDKIS RIYGDWIDDN E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-127	C3H family protein