PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533865.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 316aa    MW: 36455.4 Da    PI: 8.0495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.4e-20953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k i+n+  r++tfskR+n ++ KA+ELS+LCd++ +vi+ ++++ 
  XP_023533865.1  9 KLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPNQS 53
                    569**************************************9874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGRGKLSMKL ISNEKSRKTT FSKRKNSLMR KAYELSTLCD VRTCVIVHGP NQSDQSPIHT  60
WPSSRDSVND MIASYKSNCL HKRTRKSFNL FDFFSDRKKK IESDMSKLRK DVAKARYPKW  120
DERLECLMEE QLRVLMVEID SKLDATKRRI ENVEERVSGG SNQTLNANMN KNQLISFEET  180
QPMMAYNQIQ AMPQDLQAGS SAVPMIQMDH EFENLNQFIY GSSLPQIHGN YFQNPNFCSD  240
PTNGMIMDST QSYSMCHYGV PLAPTHSIMP LSYMQLTDDQ MMMGCSSNSQ MGLPNASNQV  300
NDQLDYFNYE YFMKNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-24M-type_MADS family protein