PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533808.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 536aa    MW: 59944.9 Da    PI: 6.268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.51.7e-1361675362374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cA+avs++d+ +aq+l+ +l++++s +g+pmqRl ay++e+L ar a s+s++yk+l+++e +   s e l++++++++v+P++kf+++
  XP_023533808.1 167 KKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSAFSGSSIYKSLRCKEPA---SMELLSYMHVLYDVCPYFKFGYM 258
                     789*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG+QW++L+qa+a Rp+gpp++RiTg+++p+s   +   l  +g rL+k+A+ ++vpfef+  +a +  d+
  XP_023533808.1 259 SANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAhaRGGGLDIVGMRLSKLAKLFNVPFEFHS-AAISGCDV 352
                     ******************************************************999889999***********************.88899*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L +++gEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqe+++n++ F+ rf+e+l+yy a+f+s++++lpr+++eri+
  XP_023533808.1 353 QQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERIN 447
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+re+vn++acegaer+erhe l+kWr r+++aGF+p+pls+ +++++k+ll +++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  XP_023533808.1 448 IEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNR-YRLEEKEGALYLGWMDRDLVASCAWK 536
                     *************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MQASQLHRGQ HMSKRLCYQP LQGVDAYCVS QFQTLGRQLY TNAGNERAQF NLQDISDRYC  60
TLESSSGSHG YATHNSTSTT VTFSSNGSPS DQHNSPDNTY GSPVSGSCIT DDISDFRHKL  120
LELETVMLGP DSDIIDSFDS FYQEGTENSE VGSWGQVMDA ITKGNLKKIL IACAKAVSDN  180
DALMAQWLMD ELRKMVSVRG EPMQRLGAYM LEGLVARSAF SGSSIYKSLR CKEPASMELL  240
SYMHVLYDVC PYFKFGYMSA NGAIAEAMKD EDRVHIIDFQ ISQGTQWITL IQAFAGRPGG  300
PPHIRITGID DPASAHARGG GLDIVGMRLS KLAKLFNVPF EFHSAAISGC DVQQKDLGIR  360
RGEALAVNFA FMLHHMPDES VSTENHRDRL LRLVKGLSPK VVTLVEQESN TNTAAFFPRF  420
IETLDYYNAM FESIDVTLPR QHKERINIEQ HCLAREVVNI LACEGAERVE RHELLGKWRL  480
RFSMAGFTPY PLSSLVNATI KTLLDNYSNR YRLEEKEGAL YLGWMDRDLV ASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein