PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023533439.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 435aa MW: 47431.8 Da PI: 6.7462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023533439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.2	5.6e-13	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ XP_023533439.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************9 PP
2	zf-CCCH	36.1	1.1e-11	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_023533439.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP
3	zf-CCCH	37.1	5.2e-12	138	160	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ XP_023533439.1 138 SCSYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP
4	zf-CCCH	39.8	7.6e-13	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_023533439.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303 689*********************96 PP
5	zf-CCCH	34.8	2.8e-11	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G CkyG++CkF H+ XP_023533439.1 321 GQAVCSYYSMYGLCKYGPSCKFDHP 345 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MPDNLQVQRN AVPNQSPDVS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVTFNILGL PMRQEEKSCS YYLRTGSCKF GVSCKFNHPQ PAPVGNMLPQ ARPGALGSAG 180 TPFMPSSGLP YASGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPPQGAIA AQDWNTYVSN 240 VSPVLPNLGY NSVNLEDSHS NGQLALSTST LTLPDRPDQP ECRYFMNNGT CKYGSDCKFH 300 HPKQRIAQSA TNVLGLPSRP GQAVCSYYSM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL 360 NSSFMKYPSN NYTLSSHDTL PQTISKSSEW VQKADPPNNK QQTTDTKVDD GTAEEVSSVS 420 CSLSGGSESL QDQSG

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MPDNLQVQRN AVPNQSPDVS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCS YYLRTGSCKF GVSCKFNHPQ PAPVGNMLPQ ARPGALGSAG  180
TPFMPSSGLP YASGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPPQGAIA AQDWNTYVSN  240
VSPVLPNLGY NSVNLEDSHS NGQLALSTST LTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNVLGLPSRP GQAVCSYYSM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL  360
NSSFMKYPSN NYTLSSHDTL PQTISKSSEW VQKADPPNNK QQTTDTKVDD GTAEEVSSVS  420
CSLSGGSESL QDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-109	C3H family protein