PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533381.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family AP2
Protein Properties Length: 409aa    MW: 45315.8 Da    PI: 8.725
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17135184155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_023533381.1 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 184
                     78*******************......55************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MMMLNLNDSI MNRDEATTDR IVMEDSETSN SSVVNADEVC NSRDEESSVL IFDILKKESP  60
GGVGGGPVPE LVTQPLFPVA GGWGDSGSPI LRTQWLNLSP TADSGGGGGQ PELKTAQPKQ  120
QQVRKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI  180
KFRGVDADIN FNISDYDEDM KQTKNLNKEE FVHVLRRQSS GISRGGSKLR GLSVQRYGRW  240
ETQMNQIIGN KGTEERSETT VDASNGGNGH NLDLSIGGIF NYHFSNSSQK LNIERPKNEN  300
NGYAHGMTGQ QPNTPPSVFS SFYSAFVPHN QERGRETRNK ESTGWRWQTA RSIEGNVNEE  360
KTKKIESHGS KSAASSGFSP SFNFGSFYAQ NNTPLHTNHC LPTPYTNIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-52AP2 family protein