PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023533200.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 292aa    MW: 33151.8 Da    PI: 6.2391
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023533200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08117138426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G+Ck+G++C++ H+
  XP_023533200.1 117 KVCHYFSK-GYCKHGNTCRYVHD 138
                     68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MDNETTKIVY ERICKLEPEY GLKIVGYVML NTNEQDMIRL AFSPDCIIQC VINTAKSDLG  60
IPEVPIPYGR VSSSPSSRLF LPHQTFSDFA LQNQMQWLSL DSATPVRRSR RREFPVKVCH  120
YFSKGYCKHG NTCRYVHDVV EKEPRVVVLS GRALDKLEIE IVELLKSRGG LPILIAALPM  180
VYRERYGRSL LGDGYLSKTG LSLTRLLALL SRIRVLDGPH GKNSIILTDD SPKRNEISEQ  240
SERGICWCSA EMEEFCLSTE QPHDFPDSWT DHHDDSTEGF SEPDTPFASH VQ