PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532999.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 351aa MW: 38975.1 Da PI: 7.3964

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	186	205	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_023532999.1 186 FSCPLCFKTFNRYNNMQMHM 205 89*****************9 PP
2	zf-C2H2	15.4	5.2e-05	270	292	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F + + ++H +++ XP_023532999.1 270 FTCRKCGKAFAVRGDWRTHEKNC 292 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MADPYSINAS SFGLYHYFSS SSSSPPSNSN PFSPYDLFSF SYSNDDNDNN NNTLKNPSSS 60 PRVLPLLSLS PVRHDHQDHS FSRNNNKNLC SPCEEDDDET VTVALHLGLP SAPSSSSSSD 120 LILRLSSTEI SDKLEGQLEE AVPVVVPNYY SVSSSSSSSA TGGGGLNKGQ YWIPTPAQIL 180 IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPQSLR GTQPTAMLRL PCYCCAPGCR 240 NNIDHPRSKP LKDFRTLQTH YKRKHGIKPF TCRKCGKAFA VRGDWRTHEK NCGKLWHCTC 300 GSDFKHKRSL KDHIKAFGHG HAAYGIDSFD EDDEPASEIE HDNDLSHSNG D

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MADPYSINAS SFGLYHYFSS SSSSPPSNSN PFSPYDLFSF SYSNDDNDNN NNTLKNPSSS  60
PRVLPLLSLS PVRHDHQDHS FSRNNNKNLC SPCEEDDDET VTVALHLGLP SAPSSSSSSD  120
LILRLSSTEI SDKLEGQLEE AVPVVVPNYY SVSSSSSSSA TGGGGLNKGQ YWIPTPAQIL  180
IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPQSLR GTQPTAMLRL PCYCCAPGCR  240
NNIDHPRSKP LKDFRTLQTH YKRKHGIKPF TCRKCGKAFA VRGDWRTHEK NCGKLWHCTC  300
GSDFKHKRSL KDHIKAFGHG HAAYGIDSFD EDDEPASEIE HDNDLSHSNG D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein