PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532788.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GRF

Protein Properties

Length: 347aa MW: 37936 Da PI: 7.96

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.9e-25	98	142	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_023532788.1 98 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 142 79****************************************986 PP
2	QLQ	60.5	4.8e-21	36	72	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT Q+q+L++Q+l++Ky++a++PvPp+L+++iqk XP_023532788.1 36 SPFTVLQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 72 89*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MNSSGCGGED GSRTVVVGGT AAAAAGSGMM GMNNRSPFTV LQWQELEHQA LIFKYMMAGL 60 PVPPDLVLPI QKSFESISHR FFHHPTMAYC SFYGKKVDPE PGRCRRTDGK KWRCSKDAYP 120 DSKYCERHMH RGRNRSRKPV ESQTMTQSSS TVTSHTAIGS SSSSSSGAGS FHGLPLNALS 180 NSQGTPTGTS QPHYPLDSIP YGIPSKDYRY IQGLRPEAGV HSFFSEASGS SRAVQMDAPM 240 DNNTWPMMPS RSLSFPASKS TENSIFQSGY PQHSFFGGEF ASGDTLKQEG QSLQPFFDEW 300 PKTRESWTGL DDERSNQTSY STTQLSISIP MASSDLSTTS SKSPHDN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MNSSGCGGED GSRTVVVGGT AAAAAGSGMM GMNNRSPFTV LQWQELEHQA LIFKYMMAGL  60
PVPPDLVLPI QKSFESISHR FFHHPTMAYC SFYGKKVDPE PGRCRRTDGK KWRCSKDAYP  120
DSKYCERHMH RGRNRSRKPV ESQTMTQSSS TVTSHTAIGS SSSSSSGAGS FHGLPLNALS  180
NSQGTPTGTS QPHYPLDSIP YGIPSKDYRY IQGLRPEAGV HSFFSEASGS SRAVQMDAPM  240
DNNTWPMMPS RSLSFPASKS TENSIFQSGY PQHSFFGGEF ASGDTLKQEG QSLQPFFDEW  300
PKTRESWTGL DDERSNQTSY STTQLSISIP MASSDLSTTS SKSPHDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-44	GRF family protein