PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532652.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 362aa MW: 37902.9 Da PI: 7.5403

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.4	7.9e-68	143	300	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t++CqdCGnqakkdC+h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + +a++ a +sa+++ +k++r +++++s+t++s+++++ XP_023532652.1 143 SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTWVPAARRRERQLMGVTANAAAGSSASTSGAKKPRLI---ASQTTSRTSTSNTTPP 234 57899*******************************************99999999999999999999999986...6667778888999999 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++l+tss lP +v+++avf+cvrv++vddg++e+aYq++v+igGh+fkG+LydqG+e XP_023532652.1 235 RSLDTSSshqdagfpeaLPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVE 300 9999999999****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MWSAAAASQR SLNYGLGSEM SMVGLRDVFV VAPASSFNPN PHHHDNNLLS DPHSLAVSNP 60 ATALGVGVIP LLTAGPCLGV EEDNLLSNRS SNRGGGIQLW QQNHYLKKMP SSLDHHLHNP 120 SAANNGLLDD GIGITGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCTTHVK 180 STWVPAARRR ERQLMGVTAN AAAGSSASTS GAKKPRLIAS QTTSRTSTSN TTPPRSLDTS 240 SSHQDAGFPE ALPGQVRAPA VFKCVRVTAV DDGDDEYAYQ AVVKIGGHIF KGFLYDQGVE 300 PGDEFPNVSE LHLGDGGGIT RNNRNGISSS PLVDPSDVYN AAATGGGAPC FLGGSNYGNQ 360 IS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MWSAAAASQR SLNYGLGSEM SMVGLRDVFV VAPASSFNPN PHHHDNNLLS DPHSLAVSNP  60
ATALGVGVIP LLTAGPCLGV EEDNLLSNRS SNRGGGIQLW QQNHYLKKMP SSLDHHLHNP  120
SAANNGLLDD GIGITGGLAS SSSATTTCQD CGNQAKKDCS HRRCRTCCRS RGFDCTTHVK  180
STWVPAARRR ERQLMGVTAN AAAGSSASTS GAKKPRLIAS QTTSRTSTSN TTPPRSLDTS  240
SSHQDAGFPE ALPGQVRAPA VFKCVRVTAV DDGDDEYAYQ AVVKIGGHIF KGFLYDQGVE  300
PGDEFPNVSE LHLGDGGGIT RNNRNGISSS PLVDPSDVYN AAATGGGAPC FLGGSNYGNQ  360
IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	1e-65	SRS family protein