PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532489.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GATA
Protein Properties Length: 344aa    MW: 37568 Da    PI: 6.9206
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17263296134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C + kTp+WR gp g ktLCnaCG++y++ +
  XP_023532489.1 263 CSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGR 296
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MIKPCVHKNR KKMECLEAKA LKSSFHWELA MESAQQDALV EEIWCLNGAN LVAGEDFEVD  60
EFFNFSNGDF EHGSALRVEE NDDYREFEKD LVSVSSDSNQ SGEIPAAGEE DSKSLLAVEL  120
AIPGDAMAEL EWVSHFVDDS QLGFSSAAVA FSRSEPEKNL AGGVISCLPT FVPVKPRTKR  180
SRQSRQTKST GSSLNQSSSS SSSSTSSGVS SASPWFIFSD AGDNVDSSNA AGEPPKKQRK  240
KSITSSPTAL QSGGLTGQIP RRCSHCLVQK TPQWRTGPHG AKTLCNACGV RYKSGRLFPE  300
YRPALSPTFC SNVHSNSHRK VLEMRKMKEV SQPATELTPM VRSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-52GATA family protein