PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532307.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 195aa    MW: 21185.9 Da    PI: 5.979
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.81.3e-41351341100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC++lrr+Ca +Cvlapyfp ++p+kfa++h++FGasn++k l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la
  XP_023532307.1  35 PCAACRILRRRCAGGCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLA 129
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023532307.1 130 KAQAE 134
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MEGSDSITTV SSTPLSQSPS SSSSPASPPP LVLSPCAACR ILRRRCAGGC VLAPYFPPTE  60
PAKFAIAHRV FGASNIIKCL QELPESQRAD AVSSMVYEAN ARIRDPVYGS AGAICQLQKQ  120
VNDLQAQLAK AQAELLNMEC QQANLVAFVC RELAQSHHQC FDDFNASPHS GFHSITQTNF  180
DDYSNVNQIW EPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-45LBD family protein