PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023532170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 685aa MW: 75006 Da PI: 6.4569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 278 | 298 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_023532170.1 278 PCPEFRK-GACRQGDACEYAHG 298 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence |
MVCNGCNSNS VSPNFMMDGC NRNLGFCISV LLEFSATDDL IGFRSAVEED GHDIDEASLW 60 YGRVFGSKKM GYEERTPLMV AAMFGSLNVL SYIVHSGRVD VNRACGSDGA TALHCAVAGG 120 SAVADQVVKY LLDAFADVNV VDANGYRPGD LIAPDFTLAS LYSRRKALQQ LLKGYGNDED 180 VLGSSEMIFY ERETQEAREV LTPRFSRDGT EKKEYPVDHS LPDIKNGIYS TDEFRMYTFK 240 IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRQG DACEYAHGIF 300 ECWLHPAQYR TRLCKDETGC IRKVCFFAHK PEELRPLYAS TGSAVLSPRS ISGSSLDIPS 360 ISLLTLGSPS STPPLTPGVS SPLGGTMWQT QCNIAPPTLQ LPGSRLKAAL SARDMDLDAE 420 LLGLESQRRR QQQFMDELSC LPSPSRWNNG IPTPTSFPSP RSRNGELNGL GGMNPTNLEN 480 IYGSSVDPAL FPQLQGLSLD SVQSPSGMRQ SLNQSFLSNY ANSIGSPPAR SSQPFGHDSS 540 VSAAESLLSS RAAAFAKRSH SFIERGVVNR HSGHSPPATS TTVTPSNFPD WGSPNGKLDW 600 GIHGEELTKL RKSASFGLRS NSLATPAMHA TSSKPDVSWV QSLVNDAPTE NSVQLSMDEQ 660 QQQQQLCHID NGDSKLYMEQ KQLVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-174 | C3H family protein |