PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023532164.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 759aa    MW: 86289.2 Da    PI: 5.5618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023532164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.52.2e-1063817551373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avss+d + a++lL++++++++ +gd +qR+a++f++AL+ar+++++++     ++  +s+ + ++ l+a+++    +P+ k+s 
  XP_023532164.1 381 LRNLLILCAQAVSSDDRRIANELLKQIRQHSTTNGDGFQRMAHFFANALEARMVGTGTGSRIHYESLIQSKISAADMLKAYQAHLSSCPFKKLSL 475
                     6899***************************************************5555444445555555569********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   ++Il+ +++++ +HiiDf+i +G+ Wp L+q L + p+gpp+lRiTg+++p +g   +e++ e g+rLak++++++vpf++++++++++e+
  XP_023532164.1 476 FFMVKMILKVADKAKSLHIIDFGICYGFLWPMLIQFLPQLPDGPPKLRITGIDHPLPGfrPAEKIDESGRRLAKYCKRFNVPFQYQAIASDNWET 570
                     *******************************************************99999****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e++++++ ++l+Vn+ ++  +llde+v+ +s+rd vL+lv++++P+++v++  + ++ ++ F +rf eal ++sal+dsl+++lpreseer+
  XP_023532164.1 571 IRIEDFKLDSSDVLVVNCFYRFNNLLDETVEETSPRDIVLRLVREMNPNLFVHSITNGSYHAPFFITRFREALFHFSALYDSLDVNLPRESEERM 665
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++Ere lgr+i+nvvacega+r+er et+++W+ r  +aGF+++pl+++++++ ++ l +++ + + ++e++g++++gWk+r +++ ++W
  XP_023532164.1 666 MIERESLGRQIMNVVACEGAQRVERPETYKQWQVRCIRAGFRQLPLDKEMMNKFRSKLTTHYHKDFVLDEDNGWILQGWKGRIVYASCCW 755
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    
MDPNLNGFPD HEADYNSDYQ ALLIQLHDLP NRSIDGFRLN DWPSLPTSYP YPEFNNPSPD  60
HVPFIQNSLF PSDPDPNQFS SPSSERAKGE PRSGSVGLNS DGGAKGVALG LSPGGDSSSD  120
ESDFKETVLK YISQMLMEEN LEEMPCMFYD PMGLKVTEKS FYDALSQNYP PSPNQPPLDC  180
ESSEDQWAVD PVEHTPPVLR RPFPSNEYQS NFEVTSGNQS NLITNSHEFV TELLAQNIFS  240
DSTSILQYQK GLEEARKFLP GGEQLNIELG SKILTGVASK VMDTTEKVKR ENSPNGSKGR  300
KNREREDVDL DSEEGRRNKH ATIYGDEEEL SEMFDKVLLH DYGGNETSAN GKLQYNGQLH  360
GSIAGKAREK KQEKRKDSVD LRNLLILCAQ AVSSDDRRIA NELLKQIRQH STTNGDGFQR  420
MAHFFANALE ARMVGTGTGS RIHYESLIQS KISAADMLKA YQAHLSSCPF KKLSLFFMVK  480
MILKVADKAK SLHIIDFGIC YGFLWPMLIQ FLPQLPDGPP KLRITGIDHP LPGFRPAEKI  540
DESGRRLAKY CKRFNVPFQY QAIASDNWET IRIEDFKLDS SDVLVVNCFY RFNNLLDETV  600
EETSPRDIVL RLVREMNPNL FVHSITNGSY HAPFFITRFR EALFHFSALY DSLDVNLPRE  660
SEERMMIERE SLGRQIMNVV ACEGAQRVER PETYKQWQVR CIRAGFRQLP LDKEMMNKFR  720
SKLTTHYHKD FVLDEDNGWI LQGWKGRIVY ASCCWVPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein