PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023532079.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GATA

Protein Properties

Length: 535aa MW: 59696.9 Da PI: 6.9628

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023532079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.3	1.2e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_023532079.1 7 CCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYENH 60 RVKSISINKN KEVKLLKRKL QQADGSIGWT IPDQSQGYYR VVDEDTSNRS SSGSAISNPE 120 SCAHFSSADA SDLTGPAQSI VWEAMVPSRK RTCVNRPKQS PVEKLTKDLY GILCEQRSSY 180 FSEASEEDLL FESEKPMVSV EIGHGSILIR HPSSIAREEE SEASSVSVDN KQYLVNEVYS 240 PHSATVLVCS ENKGMNVPPS RIGKMKNPSG SGVQQVQIKR DDSHHESAQI LGSHNSPLCD 300 VDINDIINFG EFGKQLTNEE QQQLMKYLPQ IDIAELPETL KSMFDSPYFK ESLTSFQQLL 360 REGVFDASFL GTMIEDCTTL KRLVLCNSSK SKWVERYHQL KKRKNDGEGS FLSNANTSVS 420 SNFMNVKRLH ESYNQNVPEV KTIMKSPKRL VMKENKDPGE NDGSCFSPRS LFALPTDGSF 480 EYLQFIERSS DQDLLLDVRS NNSFPQAELL HPTSRTGGRQ ASTCSSSVHP NLVHH

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MGKHGPCCHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYENH  60
RVKSISINKN KEVKLLKRKL QQADGSIGWT IPDQSQGYYR VVDEDTSNRS SSGSAISNPE  120
SCAHFSSADA SDLTGPAQSI VWEAMVPSRK RTCVNRPKQS PVEKLTKDLY GILCEQRSSY  180
FSEASEEDLL FESEKPMVSV EIGHGSILIR HPSSIAREEE SEASSVSVDN KQYLVNEVYS  240
PHSATVLVCS ENKGMNVPPS RIGKMKNPSG SGVQQVQIKR DDSHHESAQI LGSHNSPLCD  300
VDINDIINFG EFGKQLTNEE QQQLMKYLPQ IDIAELPETL KSMFDSPYFK ESLTSFQQLL  360
REGVFDASFL GTMIEDCTTL KRLVLCNSSK SKWVERYHQL KKRKNDGEGS FLSNANTSVS  420
SNFMNVKRLH ESYNQNVPEV KTIMKSPKRL VMKENKDPGE NDGSCFSPRS LFALPTDGSF  480
EYLQFIERSS DQDLLLDVRS NNSFPQAELL HPTSRTGGRQ ASTCSSSVHP NLVHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-149	GATA family protein