PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023531990.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 330aa MW: 37029.2 Da PI: 8.8577

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023531990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3.1e-12	160	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq XP_023531990.1 160 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 206 5899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MEISSMMGFS EMGMEDSGFV NQWHKSSIDE ISTLPLAAAF GENLQHSYAH TNLDHKASSN 60 HSQNAIFGYA KHLSSYQTAN HSPNAHVVAY PTTSVSASNY TNQMDFTRPK EEVVCPQSIS 120 NIPSDMLISQ GSLCHQSHLT KSDRGAKRTA IKSRLPPAQD HILAERKRRE KLSQRFIALS 180 AIVPGLKKMD KASVLGDAIK YLKQLQEKVK ILEEQTRRKD IESVVFVKKS RVFGDGNNTS 240 KTEDEPLPEI EARSCDKNIL IRIHCVKNKD VIEKTIAEIE KLHLTIVNSS FMSFGNLALD 300 ITIIAQMDNE FRLSLKDLVK NLQSTLRSFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERKRRE
2	166	171	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-61	bHLH family protein