PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531870.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 383aa    MW: 42332.4 Da    PI: 6.2337
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck G++C FaHg
  XP_023531870.1 141 ACPDFRK-GSCKKGESCEFAHG 161
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MVIGQRHRPG PLLHITPLTI PEEPANETRL PFPLSGISVS SDDNANGGDY SPYHLQEVLA  60
AFQRYLPSTS ESEIESDLEL SGRESDVPVD AYSCDQFRIF EFKVRKCTRG RSHDWTECPF  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGSC KKGESCEFAH GVFECWLHPS RYRTQPCKDG  180
INCRRRVCFF AHTPEQLRVL PQQSPRDANS PDSYDESPLR QCLDGTCAKP LPFLSSPVSV  240
SPSATPVDSP PVSPMTRSLA RSLGSSSVNE IVASLHMHLS KVNSLPSSWN VPIGSPGYPS  300
RIRPGFCSLP TTPTQPPTGP GVGLLDLTDH GFVEEPAMER VESGRELRAK MLQKLSEENS  360
LDLADSGPSD CTPDVEWVSD LVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-100C3H family protein