PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531848.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family SRS
Protein Properties Length: 313aa    MW: 31577 Da    PI: 8.9389
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.96.3e-61972604154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssae 95 
                     g  +C+dCGnqakkdC+h+RCR CCksrgfdCathvkstWvpaa+rrerq   aaa++ a+  +   +++  k++r   ++++++ s+t++s++ 
  XP_023531848.1  97 GVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTssgSTSGGKKPRLI-ASQTTTNSHTSTSNT- 189
                     5568*********************************************99988877776655533345555555543.444445555555544. PP

          DUF702  96 skkeletss.........lPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154
                     ++++++t s         lPe+v+++avf+cvrv++v+    g +e+aYq++v+igGhvfkG+Lyd+G+e+
  XP_023531848.1 190 PTRSFDTCSdmsykrakkLPEQVRAPAVFKCVRVTAVEGggsGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 260
                     555666666688899999********************8544679***********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MWPSSSSSRP IAGAYGHTAP PPTDMVGLMA SGYGVGLSVL PLLTGLAPSS VGIEETNLMI  60
SRGGGGDGGG GGGGVQFHGN NFDGFGFLGG GSSLNSGVGT CHDCGNQAKK DCNHRRCRSC  120
CKSRGFDCAT HVKSTWVPAA RRRERQVLSA AAAAAATGGT SSGSTSGGKK PRLIASQTTT  180
NSHTSTSNTP TRSFDTCSDM SYKRAKKLPE QVRAPAVFKC VRVTAVEGGG SGGNEYAYQA  240
VVKIGGHVFK GYLYDHGVEA REGFPMLSDL HLGGGGDGGS TSSPIIDPSD VYGSSAGRGG  300
GLAGGSGYGN PIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.17e-52SRS family protein