PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023531847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SRS | ||||||||
Protein Properties | Length: 315aa MW: 31719.2 Da PI: 8.9389 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 196.3 | 9.7e-61 | 97 | 262 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssae 95 g +C+dCGnqakkdC+h+RCR CCksrgfdCathvkstWvpaa+rrerq aaa++ a+ + +++ k++r ++++++ s+t++s+ + XP_023531847.1 97 GVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKSTWVPAARRRERQVLSAAAAAAATGGTssgSTSGGKKPRLI-ASQTTTNSHTSTSN-T 189 5568*********************************************99988877776655533344555555543.44444455555544.4 PP DUF702 96 skkeletss...........lPeevsseavfrcvrvssvdd...geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++t s lPe+v+++avf+cvrv++v+ g +e+aYq++v+igGhvfkG+Lyd+G+e+ XP_023531847.1 190 PTRSFDTCSaadmsykrakkLPEQVRAPAVFKCVRVTAVEGggsGGNEYAYQAVVKIGGHVFKGYLYDHGVEA 262 55677777678899999999********************8544679***********************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MWPSSSSSRP IAGAYGHTAP PPTDMVGLMA SGYGVGLSVL PLLTGLAPSS VGIEETNLMI 60 SRGGGGDGGG GGGGVQFHGN NFDGFGFLGG GSSLNSGVGT CHDCGNQAKK DCNHRRCRSC 120 CKSRGFDCAT HVKSTWVPAA RRRERQVLSA AAAAAATGGT SSGSTSGGKK PRLIASQTTT 180 NSHTSTSNTP TRSFDTCSAA DMSYKRAKKL PEQVRAPAVF KCVRVTAVEG GGSGGNEYAY 240 QAVVKIGGHV FKGYLYDHGV EAREGFPMLS DLHLGGGGDG GSTSSPIIDP SDVYGSSAGR 300 GGGLAGGSGY GNPIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 4e-53 | SRS family protein |