PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023531745.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family LBD
Protein Properties Length: 301aa    MW: 33294.3 Da    PI: 8.4315
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023531745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.7e-2970173199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+yG++g+++++++ql+q 
  XP_023531745.1  70 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAVFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQD 164
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_023531745.1 165 AVEAVLKGA 173
                     **9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEVVKESFPV VSKKPENHRN WKTTIFLENQ LRKSLQKQNP PLFLSPSTFL PFCAQILLPY  60
SSIHHAMRIS CNGCRVLRKG CSESCSIRPC LQWIKTPQSQ ANATFFLAKF YGRAGLVNLI  120
NAGPDHLRPA VFKSLLFEAC GRIVNPIYGS AGLLWSGSWQ LCQDAVEAVL KGAPILSVSS  180
ETAASHMGPP LKDCDIRHVS KQQGAAPDSA LRKIKTRRRF KRSAPNKPMP EEEPVVVTEF  240
VFDDPTRVVS EPRCLKFELD SWVGHKSQEK DCSSDEAECL SVEGSAVGQG GDVELELSLG  300
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-82LBD family protein